Data Model Libraries
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    Class MolecularSequenceQualityRocComponent

    MolecularSequenceQualityRocComponent Class

    FHIR Specification

    • Short: Receiver Operator Characteristic (ROC) Curve
    • Definition: Receiver Operator Characteristic (ROC) Curve to give sensitivity/specificity tradeoff.

    Hierarchy (View Summary)

    Implements

    Index

    Constructors

    Properties

    score?: IntegerType[]

    MolecularSequence.quality.roc.score Element

    FHIR Specification

    • Short: Genotype quality score
    • Definition: Invidual data point representing the GQ (genotype quality) score threshold.
    • FHIR Type: integer
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true
    numTP?: IntegerType[]

    MolecularSequence.quality.roc.numTP Element

    FHIR Specification

    • Short: Roc score true positive numbers
    • Definition: The number of true positives if the GQ score threshold was set to "score" field value.
    • FHIR Type: integer
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true
    numFP?: IntegerType[]

    MolecularSequence.quality.roc.numFP Element

    FHIR Specification

    • Short: Roc score false positive numbers
    • Definition: The number of false positives if the GQ score threshold was set to "score" field value.
    • FHIR Type: integer
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true
    numFN?: IntegerType[]

    MolecularSequence.quality.roc.numFN Element

    FHIR Specification

    • Short: Roc score false negative numbers
    • Definition: The number of false negatives if the GQ score threshold was set to "score" field value.
    • FHIR Type: integer
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true
    precision?: DecimalType[]

    MolecularSequence.quality.roc.precision Element

    FHIR Specification

    • Short: Precision of the GQ score
    • Definition: Calculated precision if the GQ score threshold was set to "score" field value.
    • FHIR Type: decimal
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true
    sensitivity?: DecimalType[]

    MolecularSequence.quality.roc.sensitivity Element

    FHIR Specification

    • Short: Sensitivity of the GQ score
    • Definition: Calculated sensitivity if the GQ score threshold was set to "score" field value.
    • FHIR Type: decimal
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true
    fMeasure?: DecimalType[]

    MolecularSequence.quality.roc.fMeasure Element

    FHIR Specification

    • Short: FScore of the GQ score
    • Definition: Calculated fScore if the GQ score threshold was set to "score" field value.
    • FHIR Type: decimal
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true

    Methods

    • Parse the provided MolecularSequenceQualityRocComponent JSON to instantiate the MolecularSequenceQualityRocComponent data model.

      Parameters

      • sourceJson: Value

        JSON representing FHIR MolecularSequenceQualityRocComponent

      • OptionaloptSourceField: string

        Optional data source field (e.g. <complexTypeName>.<complexTypeFieldName>); defaults to MolecularSequenceQualityRocComponent

      Returns undefined | MolecularSequenceQualityRocComponent

      MolecularSequenceQualityRocComponent data model or undefined for MolecularSequenceQualityRocComponent

      JsonError if the provided JSON is not a valid JSON object

    • Determines if the modifierExtension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the modifierExtension property exists and has any values.

      AssertionError for invalid url

    • Returns undefined | string

      the id property value

    • Assigns the provided value to the id property.

      Parameters

      • value: undefined | string

        the id value

      Returns this

      this

      PrimitiveTypeError for invalid value

    • Returns boolean

      true if id exists and has a value; false otherwise

    • Determines if the extension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Determines if the extension property exists.

      Parameters

      • url: string

        the url that identifies a specific Extension

      Returns undefined | IExtension

      an Extension having the provided url

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Adds the provided Extension to the extension property array.

      Parameters

      • extension: undefined | IExtension

        the Extension value to add to the extension property array

      Returns this

      this

    • Removes the Extension having the provided url from the extension property array.

      Parameters

      • url: string

        the url that identifies a specific Extension to remove

      Returns void

      AssertionError for invalid url

    • Returns boolean

      true if and only if the data model has required fields (min cardinality > 0) and at least one of those required fields in the instance is empty; false otherwise

    • Returns boolean

      true if the instance is a FHIR complex or primitive datatype; false otherwise