Data Model Libraries
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    Class MolecularSequenceStructureVariantComponent

    MolecularSequenceStructureVariantComponent Class

    FHIR Specification

    • Short: Structural variant
    • Definition: Information about chromosome structure variation.

    Hierarchy (View Summary)

    Implements

    Index

    Constructors

    Properties

    variantType?: CodeableConcept

    MolecularSequence.structureVariant.variantType Element

    FHIR Specification

    • Short: Structural variant change type
    • Definition: Information about chromosome structure variation DNA change type.
    • FHIR Type: CodeableConcept
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    exact?: BooleanType

    MolecularSequence.structureVariant.exact Element

    FHIR Specification

    • Short: Does the structural variant have base pair resolution breakpoints?
    • Definition: Used to indicate if the outer and inner start-end values have the same meaning.
    • FHIR Type: boolean
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    length?: IntegerType

    MolecularSequence.structureVariant.length Element

    FHIR Specification

    • Short: Structural variant length
    • Definition: Length of the variant chromosome.
    • FHIR Type: integer
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true

    MolecularSequence.structureVariant.outer Element

    FHIR Specification

    • Short: Structural variant outer
    • Definition: Structural variant outer.
    • FHIR Type: BackboneElement
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true

    MolecularSequence.structureVariant.inner Element

    FHIR Specification

    • Short: Structural variant inner
    • Definition: Structural variant inner.
    • FHIR Type: BackboneElement
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true

    Methods

    • Parse the provided MolecularSequenceStructureVariantComponent JSON to instantiate the MolecularSequenceStructureVariantComponent data model.

      Parameters

      • sourceJson: Value

        JSON representing FHIR MolecularSequenceStructureVariantComponent

      • OptionaloptSourceField: string

        Optional data source field (e.g. <complexTypeName>.<complexTypeFieldName>); defaults to MolecularSequenceStructureVariantComponent

      Returns undefined | MolecularSequenceStructureVariantComponent

      MolecularSequenceStructureVariantComponent data model or undefined for MolecularSequenceStructureVariantComponent

      JsonError if the provided JSON is not a valid JSON object

    • Determines if the modifierExtension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the modifierExtension property exists and has any values.

      AssertionError for invalid url

    • Returns undefined | string

      the id property value

    • Assigns the provided value to the id property.

      Parameters

      • value: undefined | string

        the id value

      Returns this

      this

      PrimitiveTypeError for invalid value

    • Returns boolean

      true if id exists and has a value; false otherwise

    • Determines if the extension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Determines if the extension property exists.

      Parameters

      • url: string

        the url that identifies a specific Extension

      Returns undefined | IExtension

      an Extension having the provided url

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Adds the provided Extension to the extension property array.

      Parameters

      • extension: undefined | IExtension

        the Extension value to add to the extension property array

      Returns this

      this

    • Removes the Extension having the provided url from the extension property array.

      Parameters

      • url: string

        the url that identifies a specific Extension to remove

      Returns void

      AssertionError for invalid url

    • Returns boolean

      true if and only if the data model has required fields (min cardinality > 0) and at least one of those required fields in the instance is empty; false otherwise

    • Returns boolean

      true if the instance is a FHIR complex or primitive datatype; false otherwise