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    Class SubstanceProteinSubunitComponent

    SubstanceProteinSubunitComponent Class

    FHIR Specification

    • Short: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times
    • Definition: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times.

    FHIR SubstanceProtein

    Hierarchy (View Summary)

    Implements

    Index

    Constructors

    constructor

    Properties

    subunit? sequence? length? sequenceAttachment? nTerminalModificationId? nTerminalModification? cTerminalModificationId? cTerminalModification?

    Methods

    parse getSubunitElement setSubunitElement hasSubunitElement getSubunit setSubunit hasSubunit getSequenceElement setSequenceElement hasSequenceElement getSequence setSequence hasSequence getLengthElement setLengthElement hasLengthElement getLength setLength hasLength getSequenceAttachment setSequenceAttachment hasSequenceAttachment getNTerminalModificationId setNTerminalModificationId hasNTerminalModificationId getNTerminalModificationElement setNTerminalModificationElement hasNTerminalModificationElement getNTerminalModification setNTerminalModification hasNTerminalModification getCTerminalModificationId setCTerminalModificationId hasCTerminalModificationId getCTerminalModificationElement setCTerminalModificationElement hasCTerminalModificationElement getCTerminalModification setCTerminalModification hasCTerminalModification fhirType isEmpty copy toJSON getModifierExtension setModifierExtension hasModifierExtension getModifierExtensionByUrl addModifierExtension removeModifierExtension getId setId hasId getExtension setExtension hasExtension getExtensionByUrl addExtension removeExtension isRequiredFieldsEmpty isResource isDataType isComplexDataType isPrimitive isBooleanPrimitive isStringPrimitive isNumberPrimitive isBigIntPrimitive isDateTimePrimitive copyValues

    Constructors

    Properties

    subunit?: IntegerType

    SubstanceProtein.subunit.subunit Element

    FHIR Specification

    • Short: Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts
    • Definition: Index of primary sequences of amino acids linked through peptide bonds in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
    • FHIR Type: integer
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    sequence?: StringType

    SubstanceProtein.subunit.sequence Element

    FHIR Specification

    • Short: The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence
    • Definition: The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.
    • FHIR Type: string
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    length?: IntegerType

    SubstanceProtein.subunit.length Element

    FHIR Specification

    • Short: Length of linear sequences of amino acids contained in the subunit
    • Definition: Length of linear sequences of amino acids contained in the subunit.
    • FHIR Type: integer
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    sequenceAttachment?: Attachment

    SubstanceProtein.subunit.sequenceAttachment Element

    FHIR Specification

    • Short: The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence
    • Definition: The sequence information shall be provided enumerating the amino acids from N- to C-terminal end using standard single-letter amino acid codes. Uppercase shall be used for L-amino acids and lowercase for D-amino acids. Transcribed SubstanceProteins will always be described using the translated sequence; for synthetic peptide containing amino acids that are not represented with a single letter code an X should be used within the sequence. The modified amino acids will be distinguished by their position in the sequence.
    • FHIR Type: Attachment
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    nTerminalModificationId?: Identifier

    SubstanceProtein.subunit.nTerminalModificationId Element

    FHIR Specification

    • Short: Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID
    • Definition: Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.
    • FHIR Type: Identifier
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    nTerminalModification?: StringType

    SubstanceProtein.subunit.nTerminalModification Element

    FHIR Specification

    • Short: The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified
    • Definition: The name of the fragment modified at the N-terminal of the SubstanceProtein shall be specified.
    • FHIR Type: string
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    cTerminalModificationId?: Identifier

    SubstanceProtein.subunit.cTerminalModificationId Element

    FHIR Specification

    • Short: Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID
    • Definition: Unique identifier for molecular fragment modification based on the ISO 11238 Substance ID.
    • FHIR Type: Identifier
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    cTerminalModification?: StringType

    SubstanceProtein.subunit.cTerminalModification Element

    FHIR Specification

    • Short: The modification at the C-terminal shall be specified
    • Definition: The modification at the C-terminal shall be specified.
    • FHIR Type: string
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true

    Methods

    • Parse the provided SubstanceProteinSubunitComponent JSON to instantiate the SubstanceProteinSubunitComponent data model.

      Parameters

      • sourceJson: Value

        JSON representing FHIR SubstanceProteinSubunitComponent

      • OptionaloptSourceField: string

        Optional data source field (e.g. <complexTypeName>.<complexTypeFieldName>); defaults to SubstanceProteinSubunitComponent

      Returns undefined | SubstanceProteinSubunitComponent

      SubstanceProteinSubunitComponent data model or undefined for SubstanceProteinSubunitComponent

      JsonError if the provided JSON is not a valid JSON object

    • Determines if the modifierExtension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the modifierExtension property exists and has any values.

      AssertionError for invalid url

    • Returns undefined | string

      the id property value

    • Assigns the provided value to the id property.

      Parameters

      • value: undefined | string

        the id value

      Returns this

      this

      PrimitiveTypeError for invalid value

    • Returns boolean

      true if id exists and has a value; false otherwise

    • Determines if the extension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Determines if the extension property exists.

      Parameters

      • url: string

        the url that identifies a specific Extension

      Returns undefined | IExtension

      an Extension having the provided url

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Adds the provided Extension to the extension property array.

      Parameters

      • extension: undefined | IExtension

        the Extension value to add to the extension property array

      Returns this

      this

    • Removes the Extension having the provided url from the extension property array.

      Parameters

      • url: string

        the url that identifies a specific Extension to remove

      Returns void

      AssertionError for invalid url

    • Returns boolean

      true if and only if the data model has required fields (min cardinality > 0) and at least one of those required fields in the instance is empty; false otherwise

    • Returns boolean

      true if the instance is a FHIR complex or primitive datatype; false otherwise

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