Data Model Libraries
    Preparing search index...

    Class SubstanceNucleicAcidSubunitComponent

    SubstanceNucleicAcidSubunitComponent Class

    FHIR Specification

    • Short: Subunits are listed in order of decreasing length; sequences of the same length will be ordered by molecular weight; subunits that have identical sequences will be repeated multiple times
    • Definition: Subunits are listed in order of decreasing length; sequences of the same length will be ordered by molecular weight; subunits that have identical sequences will be repeated multiple times.

    FHIR SubstanceNucleicAcid

    Hierarchy (View Summary)

    Implements

    Index

    Constructors

    constructor

    Properties

    subunit? sequence? length? sequenceAttachment? fivePrime? threePrime? linkage? sugar?

    Methods

    parse getSubunitElement setSubunitElement hasSubunitElement getSubunit setSubunit hasSubunit getSequenceElement setSequenceElement hasSequenceElement getSequence setSequence hasSequence getLengthElement setLengthElement hasLengthElement getLength setLength hasLength getSequenceAttachment setSequenceAttachment hasSequenceAttachment getFivePrime setFivePrime hasFivePrime getThreePrime setThreePrime hasThreePrime getLinkage setLinkage addLinkage hasLinkage getSugar setSugar addSugar hasSugar fhirType isEmpty copy toJSON getModifierExtension setModifierExtension hasModifierExtension getModifierExtensionByUrl addModifierExtension removeModifierExtension getId setId hasId getExtension setExtension hasExtension getExtensionByUrl addExtension removeExtension isRequiredFieldsEmpty isResource isDataType isComplexDataType isPrimitive isBooleanPrimitive isStringPrimitive isNumberPrimitive isBigIntPrimitive isDateTimePrimitive copyValues initLinkage initSugar

    Constructors

    Properties

    subunit?: IntegerType

    SubstanceNucleicAcid.subunit.subunit Element

    FHIR Specification

    • Short: Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts
    • Definition: Index of linear sequences of nucleic acids in order of decreasing length. Sequences of the same length will be ordered by molecular weight. Subunits that have identical sequences will be repeated and have sequential subscripts.
    • FHIR Type: integer
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    sequence?: StringType

    SubstanceNucleicAcid.subunit.sequence Element

    FHIR Specification

    • Short: Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured
    • Definition: Actual nucleotide sequence notation from 5' to 3' end using standard single letter codes. In addition to the base sequence, sugar and type of phosphate or non-phosphate linkage should also be captured.
    • FHIR Type: string
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    length?: IntegerType

    SubstanceNucleicAcid.subunit.length Element

    FHIR Specification

    • Short: The length of the sequence shall be captured
    • Definition: The length of the sequence shall be captured.
    • FHIR Type: integer
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    sequenceAttachment?: Attachment

    SubstanceNucleicAcid.subunit.sequenceAttachment Element

    FHIR Specification

    • Short: (TBC)
    • Definition: (TBC).
    • FHIR Type: Attachment
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    fivePrime?: CodeableConcept

    SubstanceNucleicAcid.subunit.fivePrime Element

    FHIR Specification

    • Short: The nucleotide present at the 5' terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5' prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant
    • Definition: The nucleotide present at the 5' terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5' prime nucleotide is the letter at the first position in the sequence. A separate representation would be redundant.
    • FHIR Type: CodeableConcept
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    threePrime?: CodeableConcept

    SubstanceNucleicAcid.subunit.threePrime Element

    FHIR Specification

    • Short: The nucleotide present at the 3' terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5' prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant
    • Definition: The nucleotide present at the 3' terminal shall be specified based on a controlled vocabulary. Since the sequence is represented from the 5' to the 3' end, the 5' prime nucleotide is the letter at the last position in the sequence. A separate representation would be redundant.
    • FHIR Type: CodeableConcept
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    linkage?: SubstanceNucleicAcidSubunitLinkageComponent[]

    SubstanceNucleicAcid.subunit.linkage Element

    FHIR Specification

    • Short: The linkages between sugar residues will also be captured
    • Definition: The linkages between sugar residues will also be captured.
    • FHIR Type: BackboneElement
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true
    sugar?: SubstanceNucleicAcidSubunitSugarComponent[]

    SubstanceNucleicAcid.subunit.sugar Element

    FHIR Specification

    • Short: 5.3.6.8.1 Sugar ID (Mandatory)
    • Definition: 5.3.6.8.1 Sugar ID (Mandatory).
    • FHIR Type: BackboneElement
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true

    Methods

    • Parse the provided SubstanceNucleicAcidSubunitComponent JSON to instantiate the SubstanceNucleicAcidSubunitComponent data model.

      Parameters

      • sourceJson: Value

        JSON representing FHIR SubstanceNucleicAcidSubunitComponent

      • OptionaloptSourceField: string

        Optional data source field (e.g. <complexTypeName>.<complexTypeFieldName>); defaults to SubstanceNucleicAcidSubunitComponent

      Returns undefined | SubstanceNucleicAcidSubunitComponent

      SubstanceNucleicAcidSubunitComponent data model or undefined for SubstanceNucleicAcidSubunitComponent

      JsonError if the provided JSON is not a valid JSON object

    • Determines if the modifierExtension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the modifierExtension property exists and has any values.

      AssertionError for invalid url

    • Returns undefined | string

      the id property value

    • Assigns the provided value to the id property.

      Parameters

      • value: undefined | string

        the id value

      Returns this

      this

      PrimitiveTypeError for invalid value

    • Returns boolean

      true if id exists and has a value; false otherwise

    • Determines if the extension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Determines if the extension property exists.

      Parameters

      • url: string

        the url that identifies a specific Extension

      Returns undefined | IExtension

      an Extension having the provided url

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Adds the provided Extension to the extension property array.

      Parameters

      • extension: undefined | IExtension

        the Extension value to add to the extension property array

      Returns this

      this

    • Removes the Extension having the provided url from the extension property array.

      Parameters

      • url: string

        the url that identifies a specific Extension to remove

      Returns void

      AssertionError for invalid url

    • Returns boolean

      true if and only if the data model has required fields (min cardinality > 0) and at least one of those required fields in the instance is empty; false otherwise

    • Returns boolean

      true if the instance is a FHIR complex or primitive datatype; false otherwise

    Settings

    Member Visibility

    On This Page

    Constructors
    Properties
    Methods
    parsegetSubunitElementsetSubunitElementhasSubunitElementgetSubunitsetSubunithasSubunitgetSequenceElementsetSequenceElementhasSequenceElementgetSequencesetSequencehasSequencegetLengthElementsetLengthElementhasLengthElementgetLengthsetLengthhasLengthgetSequenceAttachmentsetSequenceAttachmenthasSequenceAttachmentgetFivePrimesetFivePrimehasFivePrimegetThreePrimesetThreePrimehasThreePrimegetLinkagesetLinkageaddLinkagehasLinkagegetSugarsetSugaraddSugarhasSugarfhirTypeisEmptycopytoJSONgetModifierExtensionsetModifierExtensionhasModifierExtensiongetModifierExtensionByUrladdModifierExtensionremoveModifierExtensiongetIdsetIdhasIdgetExtensionsetExtensionhasExtensiongetExtensionByUrladdExtensionremoveExtensionisRequiredFieldsEmptyisResourceisDataTypeisComplexDataTypeisPrimitiveisBooleanPrimitiveisStringPrimitiveisNumberPrimitiveisBigIntPrimitiveisDateTimePrimitivecopyValuesinitLinkageinitSugar