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    Class SubstanceProtein

    SubstanceProtein Class

    A SubstanceProtein is defined as a single unit of a linear amino acid sequence, or a combination of subunits that are either covalently linked or have a defined invariant stoichiometric relationship. This includes all synthetic, recombinant and purified SubstanceProteins of defined sequence, whether the use is therapeutic or prophylactic. This set of elements will be used to describe albumins, coagulation factors, cytokines, growth factors, peptide/SubstanceProtein hormones, enzymes, toxins, toxoids, recombinant vaccines, and immunomodulators.

    FHIR Specification

    • Short: A SubstanceProtein is defined as a single unit of a linear amino acid sequence, or a combination of subunits that are either covalently linked or have a defined invariant stoichiometric relationship. This includes all synthetic, recombinant and purified SubstanceProteins of defined sequence, whether the use is therapeutic or prophylactic. This set of elements will be used to describe albumins, coagulation factors, cytokines, growth factors, peptide/SubstanceProtein hormones, enzymes, toxins, toxoids, recombinant vaccines, and immunomodulators
    • Definition: A SubstanceProtein is defined as a single unit of a linear amino acid sequence, or a combination of subunits that are either covalently linked or have a defined invariant stoichiometric relationship. This includes all synthetic, recombinant and purified SubstanceProteins of defined sequence, whether the use is therapeutic or prophylactic. This set of elements will be used to describe albumins, coagulation factors, cytokines, growth factors, peptide/SubstanceProtein hormones, enzymes, toxins, toxoids, recombinant vaccines, and immunomodulators.
    • FHIR Version: 5.0.0

    FHIR SubstanceProtein

    Hierarchy (View Summary)

    Implements

    Index

    Constructors

    constructor

    Properties

    sequenceType? numberOfSubunits? disulfideLinkage? subunit?

    Methods

    parse getSequenceType setSequenceType hasSequenceType getNumberOfSubunitsElement setNumberOfSubunitsElement hasNumberOfSubunitsElement getNumberOfSubunits setNumberOfSubunits hasNumberOfSubunits getDisulfideLinkageElement setDisulfideLinkageElement addDisulfideLinkageElement hasDisulfideLinkageElement getDisulfideLinkage setDisulfideLinkage addDisulfideLinkage hasDisulfideLinkage getSubunit setSubunit addSubunit hasSubunit fhirType isEmpty copy toJSON getText setText hasText getContained setContained addContained hasContained getExtension setExtension hasExtension getExtensionByUrl addExtension removeExtension getModifierExtension setModifierExtension hasModifierExtension getModifierExtensionByUrl addModifierExtension removeModifierExtension resourceType getIdElement setIdElement hasIdElement getId setId hasId getMeta setMeta hasMeta getImplicitRulesElement setImplicitRulesElement hasImplicitRulesElement getImplicitRules setImplicitRules hasImplicitRules getLanguageElement setLanguageElement hasLanguageElement getLanguage setLanguage hasLanguage isResource isRequiredFieldsEmpty isDataType isComplexDataType isPrimitive isBooleanPrimitive isStringPrimitive isNumberPrimitive isBigIntPrimitive isDateTimePrimitive copyValues initDisulfideLinkage initSubunit

    Constructors

    Properties

    sequenceType?: CodeableConcept

    SubstanceProtein.sequenceType Element

    FHIR Specification

    • Short: The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence
    • Definition: The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence.
    • FHIR Type: CodeableConcept
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    numberOfSubunits?: IntegerType

    SubstanceProtein.numberOfSubunits Element

    FHIR Specification

    • Short: Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable
    • Definition: Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable.
    • FHIR Type: integer
    • Cardinality: 0..1
    • isModifier: false
    • isSummary: true
    disulfideLinkage?: StringType[]

    SubstanceProtein.disulfideLinkage Element

    FHIR Specification

    • Short: The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions
    • Definition: The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions.
    • FHIR Type: string
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true
    subunit?: SubstanceProteinSubunitComponent[]

    SubstanceProtein.subunit Element

    FHIR Specification

    • Short: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times
    • Definition: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times.
    • FHIR Type: BackboneElement
    • Cardinality: 0..*
    • isModifier: false
    • isSummary: true

    Methods

    • Parse the provided SubstanceProtein JSON to instantiate the SubstanceProtein data model.

      Parameters

      • sourceJson: Value

        JSON representing FHIR SubstanceProtein

      • OptionaloptSourceField: string

        Optional data source field (e.g. <complexTypeName>.<complexTypeFieldName>); defaults to SubstanceProtein

      Returns undefined | SubstanceProtein

      SubstanceProtein data model or undefined for SubstanceProtein

      JsonError if the provided JSON is not a valid JSON object

    • Assigns the provided value to the text property.

      Parameters

      Returns this

      this

    • Returns boolean

      true if the text property exists and has a value; false otherwise

    • Assigns the provided Resource array value to the contained property.

      Parameters

      • value: undefined | IResource[]

        the contained array value

      Returns this

      this

    • Returns boolean

      true if the contained property exists and has a value; false otherwise

    • Assigns the provided array of Extension values to the extension property.

      Parameters

      • extension: undefined | IExtension[]

        array of Extensions

      Returns this

      this

    • Determines if the extension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url; false otherwise

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the extension property exists and has any values.

      AssertionError for invalid url

    • Adds the provided Extension to the extension property array.

      Parameters

      • extension: undefined | IExtension

        the Extension value to add to the extension property array

      Returns this

      this

    • Removes the Extension having the provided url from the extension property array.

      Parameters

      • url: string

        the url that identifies a specific Extension to remove

      Returns void

      AssertionError for invalid url

    • Determines if the modifierExtension property exists.

      Parameters

      • Optionalurl: string

        the url that identifies a specific Extension

      Returns boolean

      true if an Extension has the provided url

      If the url is provided, determines if an Extension having the provided url exists. If the url is not provided, determines if the modifierExtension property exists and has any values.

      AssertionError for invalid url

    • Assigns the provided PrimitiveType value to the id property.

      Parameters

      • element: undefined | IdType

        the id value

      Returns this

      this

    • Returns undefined | string

      the id property value as a primitive value

    • Assigns the provided primitive value to the id property.

      Parameters

      • value: undefined | string

        the id value

      Returns this

      this

      PrimitiveTypeError for invalid primitive types

    • Returns boolean

      true if the id property exists and has a value; false otherwise

    • Assigns the provided value to the meta property.

      Parameters

      • value: undefined | Meta

        the meta value

      Returns this

      this

    • Returns boolean

      true if the meta property exists and has a value; false otherwise

    • Assigns the provided primitive value to the implicitRules property.

      Parameters

      • value: undefined | string

        the implicitRules value

      Returns this

      this

      PrimitiveTypeError for invalid primitive types

    • Returns undefined | string

      the language property value as a primitive value

    • Assigns the provided primitive value to the language property.

      Parameters

      • value: undefined | string

        the language value

      Returns this

      this

      PrimitiveTypeError for invalid primitive types

    • Returns boolean

      true if the language property exists and has a value; false otherwise

    • Returns boolean

      true if and only if the data model has required fields (min cardinality > 0) and at least one of those required fields in the instance is empty; false otherwise

    • Returns boolean

      true if the instance is a FHIR complex or primitive datatype; false otherwise

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    Methods
    parsegetSequenceTypesetSequenceTypehasSequenceTypegetNumberOfSubunitsElementsetNumberOfSubunitsElementhasNumberOfSubunitsElementgetNumberOfSubunitssetNumberOfSubunitshasNumberOfSubunitsgetDisulfideLinkageElementsetDisulfideLinkageElementaddDisulfideLinkageElementhasDisulfideLinkageElementgetDisulfideLinkagesetDisulfideLinkageaddDisulfideLinkagehasDisulfideLinkagegetSubunitsetSubunitaddSubunithasSubunitfhirTypeisEmptycopytoJSONgetTextsetTexthasTextgetContainedsetContainedaddContainedhasContainedgetExtensionsetExtensionhasExtensiongetExtensionByUrladdExtensionremoveExtensiongetModifierExtensionsetModifierExtensionhasModifierExtensiongetModifierExtensionByUrladdModifierExtensionremoveModifierExtensionresourceTypegetIdElementsetIdElementhasIdElementgetIdsetIdhasIdgetMetasetMetahasMetagetImplicitRulesElementsetImplicitRulesElementhasImplicitRulesElementgetImplicitRulessetImplicitRuleshasImplicitRulesgetLanguageElementsetLanguageElementhasLanguageElementgetLanguagesetLanguagehasLanguageisResourceisRequiredFieldsEmptyisDataTypeisComplexDataTypeisPrimitiveisBooleanPrimitiveisStringPrimitiveisNumberPrimitiveisBigIntPrimitiveisDateTimePrimitivecopyValuesinitDisulfideLinkageinitSubunit